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Draft Genome Sequences of Switchgrass Diazotrophs
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics … is wild,” and admitting, “friends give me a hard time for that.” But the title brought him back to his first … these amazing technologies that the JGI has to identify and sequence who’s making what, that the context at a microscale …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … and metatranscriptome sequences, as well as individual reference fungal genome sequences assembled as part of its …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. … at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria …
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Learning to Look
… Machine learning approach significantly expands inovirus … tool Roux and his colleagues developed first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples
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Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi
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Oxic–anoxic cycling promotes coupling between complex carbon metabolism and denitrification in woodchip bioreactors
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence data from over 1.3 million publicly available … U.S. Department of Energy Joint Genome Institute (https:// …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by … The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta … State University, commented that “Washburn Hot Springs is a highly-reduced, suboxic system that may be analogous to …
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Population genomics of a forest fungus reveals high gene flow and climate adaptation signatures
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