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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only assemblies and not …
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A Powerful Technique to Study Microbes, Now Easier
… Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure microbial activity in soil. Now, the researchers and robots …
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New and Improved: Eucalyptus Reference is Now Accessible
… to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant … published in 2014 by a team led by University of Pretoria scientists with help from researchers at the DOE Joint …
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Triggering Morel Fruiting
… led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the … is triggered when nutrients are acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes … and his patent has proven difficult to reproduce. While scientists and biotechnological engineers all over the world …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … generate from carbon dioxide they take in. In this way, encouraging this symbiosis could improve the way soils store …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor … But scientists have wondered exactly how the microbial community carries out its helpful metabolism: … findings in the  Proceedings of the National Academy of Sciences . The team focused on the dominant bacterial clades …
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Eelgrass Proves to Be Much Younger Than We Thought
… about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the … originated in Japan before spreading around the globe. Now, scientists have shed light on both when and how eelgrass … many species able to occupy the regions where eelgrass flourishes. The plant can thrive in both frigid and tropical …
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A survey of computational approaches for characterizing microbial interactions in microbial mats
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Trent Northen
… the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic … Dr. Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of … mass spectrometry approaches and model laboratory ecosystems (EcoFABs). …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … seed dispersal in wild populations for the first time.  “To our knowledge, nobody has ever discovered a dispersal gene …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic …
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Help from Citrus’ Bitter, Hardier Cousin
… citrus, trifoliate orange ripens only bitter, intensely sour fruit. Yet this plant, native to China and now … a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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