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PhycoCosm Tutorial
Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed …
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JGIota: Looking Back at Methane-Making Microbes
We count on livestock for food and fiber, but raising these animals also produces … from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported … still producing things like meat, milk, and wool. Hear more from JGI collaborators Sinead Leahy (New Zealand …
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … stages of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized …
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JGI Welcomes New UEC Members
… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices … to the UEC. Members serve three-year terms and can serve no more than two consecutive terms. In September, the JGI … who represent the scientific areas of plant genomics, DNA synthesis and metabolomics, …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… who has been awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium 2017-2020! Established by the University … of microbiology and is awarded on the recommendation of a panel of experts of the International Committee on …
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Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences
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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
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I-Min (Amy) Chen
… of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. … data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … kind, deployed to tens of pharmaceutical and biotech companies. … Chen I-MA, Chu K, Palaniappan K, Ratner A, Huang …
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Virus-Microbe Interactions of Mud Island Mangroves
… collected on Mud Island – “it’s essentially a mud island, more or less, right?” – off the coast of south Texas. At the … the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his … as a computational biologist. My primary future goal is to form a startup.” …
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Game On: High School Students Drive Everglades Metagenomics Study
… out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … able to receive training for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal for their sample … rest of the community. These high school students now feel more empowered and equipped for their future research …
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Defining the core Arabidopsis thaliana root microbiome
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Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T)
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