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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … identified 15 core genes shared across all fungi, and found that some of these genes have moved from the mitochondria … they are well-suited to train machine learning models that predict biological traits from DNA sequences. The study …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special … as a member of  its Secondary Metabolites research group . That group, led by JGI Director Nigel Mouncey, has launched … continued. “… There are still so many chemical compounds that have not been discovered that can be produced as …
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Back to the Future! A Sorghum Story
… You might know sorghum as an edible grain. But there are some sorghum varieties, grown on marginal land with little water, which were developed specifically to turn their biomass into sustainable biofuel and bioproducts. John Mullet, a …
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Creating an Energy Market for Miscanthus
… and a potential fuel for the future. But, to be competitive in the market, both energy policy and Miscanthus will need some upgrades. In this episode, hear from scientists working on understanding Miscanthus biology and the economic …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single … Q: In her presentation, Michelle O’Malley said that having constant conversations helped with the proposal … and JGI staff to help you appropriately scope a proposal that will be competitive. Q:  Can you elaborate on the …
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A Shrubbier Version of Rubber
… one tree species: Hevea brasiliensis . It’s great at producing latex that becomes rubber, but it’s vulnerable to disease and … shifts. So researchers are looking into a desert shrub that’s native to North America: guayule.  This episode was …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. … C. reinhardtii on PhycoCosm …
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Exploring the Diversity of the American Prairie’s Switchgrass
… switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. So, a team of scientists made an ambitious plan to begin to link the plant’s varying traits — height, biomass, …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler … Lab is home to two supercomputers — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like … Program. He and Grimwood were also part of the JGI team that contributed to the multinational consortium of researchers that sequenced and assembled the simplest cotton genome ( G. …
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Steven Wilson
… Since 2018, Mr. Wilson has served as the Systems Engineering … is responsible for developing and supporting applications that span the lifecycle of activities at JGI - proposal … and automation of microbial/metagenomic assemblies, portals that make data available to the public, and our …
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