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The Megadata of Lake Mendota - Part 2: Souped Up Computing
Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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Extracting the Secrets of Secondary Metabolites
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … CRISPR to knock out or activate genes, researchers at the JGI were able to monitor loss- and gain-of-function. The … uncharacterized biosynthetic gene cluster. That work by JGI researchers was published April 2022 in Cell Chemical …
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How to Target a Microbial Needle within a Community Haystack
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Development of this protocol was enabled by the JGI’s  Emerging Technologies Opportunity Program . The ETOP … develop technology that can then be made available to JGI users in order to address pressing energy and …
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JGI-UC Merced Interns Share Their 2021 Experiences
… from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone … year and continue working on their research project! The JGI-UC Merced internship program was founded in 2014 with … Analysis of Genus Roseovarius … Implementing a Scalable JGI-RQC Pipeline on the Cloud …
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Ben Bowen
… niche partitioning among sympatric soil bacteria. Nature communications, 6(1), 8289. Yao, Y., Sun, T., Wang, …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for computational analysis of the AT enzyme family, the JGI provided DNA synthesis capabilities to enable functional … separately for billions of years have some common signatures of muli-substrate specificity. However, different …
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Finding the Fermenters
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … metabolism from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the …
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Supercharging SIP in the Fungal Hyphosphere
HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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W. Berkeley Kauffman
… utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, …
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Neha Varghese
… and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems group. The award ceremony was held …
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata …
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