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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … can support biological data analysis. It is a free, open source analytics platform provided to the research community … the 500-gigabase cap and that you don’t request outside of the sample range that’s listed. Q: What are the pros and …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from … metagenomes. He also demonstrates briefly how to leverage novel capabilities of IMG/VR to browse and search through …
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JGI on the 2020 Highly Cited Researchers List
… fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. Additionally, as part of an … 135 fungal sequenced genomes to understand how plants and fungi developed symbiotic relationships, and how the …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, … Neri et al., 2023. Expansion of the global RNA virome reveals diverse clades of …
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Len Pennacchio
… Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in … Hollaender Distinguished Fellow where he identified a novel apolipoprotein (ApoA5) involved in human and mouse …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited speakers shared how research infrastructure – DNA … most pressing energy and environment challenges. The JGI offers these solutions to the worldwide scientific community …
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User Support
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI … as needed: Provide additional requested information or resources to users Coordinate meetings with DOE JGI Science …
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An Integrated Dataset to Understand Ecosystem Interaction
… data set will help identify how different elements of the ecosystem interact and respond to changes in the … rhizosphere. Metabolomics allowed them to then examine the chemicals and small molecules produced by the trees and … trees. The data set generated is 25 terabytes in size. Resources for genomic sequencing, analysis and …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from … In the last two episodes, we’ve covered the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this …
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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works … staff to onboard users and guide them through the process of working with our facility. This includes help with: … Please review our FAQ in advance of contacting the PMO office.  …
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