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Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis
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Toward More Efficient Artificial Photosynthesis
… (MPI) for Terrestrial Microbiology and the University of Bordeaux have developed a platform that mimics … current natural processes and use it as a sustainable resource for making high-value bioproducts. As a step toward … enzymes and other parts that can be further explored for novel functions. In the current study, the team combined the …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP allows researchers to go … MetaSIPSim … Microbes Persist SFA on KBase … Additional Resources …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … the California oak woodlands from the air, large swaths of the bleached, skeletal remains of trees can be seen. …
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … will help the JGI shape its programs, capabilities, and resources to best meet the broad base of user community needs. … FICUS programs and brings expertise in metagenomics and novel applications for long-read DNA sequencing. As a UEC …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … metabolism occurs in environments such as ruminant guts, sediments, and anaerobic bioreactors. Aside from …
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … growth and reproduction—most organisms produce a set of "secondary metabolites," chemical compounds that often … publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites are useful in a …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … researchers previously applied this approach to uncover a novel group of giant viruses dubbed “Klosneuviruses.” … unicellular hosts,” Schulz added. The work also used resources of the  National Energy Research Scientific …
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … wastewater, and even animal and human (for the first time) gut and taxonomically classified into 27 distinct clades (17 … & Applications (VEGA) Symposium. The work also used resources of the National Energy Research Scientific Computing …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The … such as heat waves, droughts and floods. The planet’s resources are being stretched by a growing human population … relationship between plant roots and arbuscular mycorrhizal fungi (AMF), known to provide plants with nutrients and …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … and stimulate a bioeconomy, where renewable, biological resources drive processes, products, and services.  Advancing … multiple avenues, including agriculture, climate modeling, novel bioproducts, and environmental remediation—all …
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