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Yasuo Yoshikuni
… has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology … engineering tools for non-model organisms, modulating microbe-microbe and plant-microbe interactions in various environments … Yoshikuni is the DNA Synthesis Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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Building Wet and Dry Lab Skills
… Brachypodium distachyon plant root exudates on the plant microbiome. This year, however, there was a new aspect to the … from the User Support Analysis team to analyze plant microbiome data via programming languages like Python. The … on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their … Asterochloris glomerata . To see how gene expression changes when living together versus apart, the team grew the … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and …
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Gut Fungi: Unexpected Source of Novel Chemicals
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … National Laboratory. The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating … the fungi were making. So, Trent Northen , head of the JGI Metabolomics Technology Group, with scientists Ben Bowen …
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Learning to Look
… cane, but only Waldo will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers … what falls within that single beam. When it comes to microbial communities, scientists have historically been … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Fishing for Novel Cellulose Degraders
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … National Laboratory (Berkeley Lab). Using a single-cell screen, they can now identify microbes with specific functional characteristics. When they …
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Open Frameworks Training the Next Generation of Scientists
… In  PLoS Pathogens , a team of faculty and researchers describe a workforce development program for higher education … faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE … applications in a range of fields including agriculture, ecosystem health, and medicine optimization.  …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Tracing the Evolution of Shiitake Mushrooms
… potential conservation threat for wild species. Sequencing across genomes also provided an opportunity to assess … fungi rely on to decay wood were widely conserved across species. Specifically, many species had very similar … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Charting Progress toward Professional Goals
… on meaningful lessons from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help … experiences, watch the brief video below. Video Transcript: Deanna Beatty : Well, hi everyone. My name is Deanna … kind of wrapping up your internship, has this internship changed, in your mind, anything about the career path that …
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Georg Rath
… has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of life science and … that is JGI. Infrastructure built by his team is unbureaucratic and driven by code, without putting humans in the …
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