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From Competition to Cooperation
… to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently evolved to establish … Summary There are three types of fungal saprotrophs in the forest. White rot can break down the cellulose, … Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project (CSP # 570) and the 1000 …
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Microbial Program
… inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … and inter-organismal interactions, which are critical for advancing sustainable solutions in agriculture, energy … to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by sequencing large …
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Capturing the genetic makeup of the active microbiome in situ
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Graduate Students Get Thesis Research Opportunity at the JGI
… time in the field of genomics and JGI scientists are developing cutting edge technologies to answer our most pressing problems. I’m very much looking forward to working with JGI and LBNL scientists and have … For her project, “Microbial Community Structure and Methane Production in California’s Canal System,” she will work with …
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Microbiome Data Science Team
… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … The research efforts of the group have concentrated in demonstrating the … with a special focus on microbiome research.  These efforts include exploration of the global diversity of …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
… on its head and opens up a new avenue to explore for efficient biofuel production. …
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Game On: High School Students Drive Everglades Metagenomics Study
… out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … made coring devices, then planned and collected from 4 sites with 5 replicates. They extracted the DNA from the … significant metabolic pathways related to methane production, nitrogen fixation, and dissimilatory sulfite …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our … energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … with his colleague Douglas Schmidt and UC Davis professor David Rizzo, they launched a concerted SOD defensive …
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JGI Workshop at SIMB NP Meeting
… often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters … (JGI), a DOE Office of Science User Facility, has been developing and applying new genomics capabilities that address these issues. Check the scientific program for relevant posters. …
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Enlarging Windows into Understanding Gene Functions
… array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … Capability DAP-seq allows researchers to identify all the sites where transcription factors bind quickly and … materials, which could be useful for industrial biofuel production, and multicellular development. “DAP-Seq is the …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … after his time at the JGI) as a helpful influence for both developing the method and publishing the paper. “I would say … ) was influential in “creating an early algorithm and developing it in order to talk about the subgenome …
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Abiotic selection of microbial genome size in the global ocean
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