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… metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State …

This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this … a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research …

… nutrient cycling that evolved separately from other similar systems, and offers new clues into a unique environment in … many researchers for nearly five decades. In these frigid systems, where organisms higher up in the food web like fish … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … 5, 16, and 19. Following the completion of the human genome project in 2003, he developed sequencing, assembly, …

… nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and identifying …

… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …

… of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  … environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing something interesting …

… , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science Graduate … workforce.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer … such as individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic engineering …

… more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This …