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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic … Serpula lacrymans on MycoCosm Data portal … Serpula humantioides on MycoCosm Data portal … Datasets … Datasets …
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … molecular protocols.  Finally, his team utilizes new technologies, e.g. acoustic liquid transfer and … of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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JGI on the 2021 Highly Cited Researchers List
… multi-institutional research team that combined field data with a reference switchgrass genome to associate … found that anaerobic fungi from herbivore poop might be a new source of novel compounds to help bolster the … aspects of the Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos Kyrpides was part of an international research …
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2025 NeLLi Symposium
… of cellular complexity, the tree of life, cultivation of new lineages and the function of candidate lineages in … work together to develop recommendations for cultivating new bacteria and archaea revealed by a recent genome census … Research Institute. Metagenomic and single-cell sequence data have provided a means to access novel microbial …
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Understanding Wildfire Recovery, Starting in Soil
… — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … from Colorado State University, the US Forest Service, New Mexico State University, the Environmental Molecular … Leotiomycetes and Coniochaeata lignaria on MycoCosm Data portal …
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Four Researchers Join JGI User Executive Committee
… advanced genomic capabilities, large-scale AI-ready data and expertise to the global research community to study … contribute to the development of bio-based products and next-generation technologies, and toward a secure energy … are regular participants of the JGI annual user meeting and New Lineages of Life symposia. Bik is a recipient of the …
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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Three Join the JGI User Executive Committee
… JGI User Executive Committee (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific … Society of America and is also a National Microbiome Data Collaborative (NMDC) Champion. As an early career … active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… to more sustainable energy production.  However, less than 10% of the microbes found in any environment can be grown in … that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on undergraduate …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… long does it take to do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, … it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed … . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. Epub 2019 Apr 4. Q:  Any advice …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical … is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI … assistance from mentors and a team to port their code to a new architecture. Proposals are due March 1, 2019 for the …
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