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… is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial … individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic engineering technique …

… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could use to conduct a similar type of search in microbial and …

… the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … a group lead at Brookhaven National Laboratory where he focused on functional genomics of phototrophs. Through this and … systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a custom high-throughput platform at the Joint Genome Institute …

… alga into a powerful platform for developing ​​bio-based industrial products.    The Science Scientists have fully … for producing specialty oils, chemical feedstocks and industrial precursors — as well as to better enable the mining … bioproducts in a more predictable and reliable manner. Because of the ease with which the alga can be genetically …

… method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell sorting (FACS) to sort … a recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach … reconstructing genomes directly from the environment and focuses on sequence reads to link mobile elements such as …

… Lab’s 2015 Women @ the Lab honorees. Woyke’s research focuses on developing and harnessing single-cell methods to … to decode genomes of bacteria and archaea from previously understudied clades, establishing their evolutionary … of features such as a new genetic code. More recently reported in Nature , she led a team that reconstructed more …

… Miscanthus  sequence offers insights into benefits of polyploidy and … and genomic toolkit for the perennial grass Miscanthus sinensis has been published. Analysis of the genome … insights into how the multiple chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights …

… This webinar focused on how the JGI employs single-molecule, long-read DNA … requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but currently require input in the ~ 30 – … depth required). Methylation detection currently only works using subread data, PacBio is working on support to use CCS …

… the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high … bacterial cells and amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. … a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His …

… discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public databases and … fungi produce and manage energy at the cellular level. Because the annotations are standardized and span the full … twice the size of the largest fungal mitochondrial genome reported before this study. A statistical comparison of …

… to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption … polyploid genome evolution in a pan-genomic context. … suited to experimental manipulation in the laboratory because of its compact genome, diploid nature, self …

… Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light … day. At the Joint Genome Institute, Dr. Cole’s research focus has been on understanding how microbes can colonize plant roots, focusing on genetic components required for effective …