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From Berkeley to Binghamton: Tracking Strawberry Evolution
… early collaborations that could help crop breeders and researchers predict how crops and model organisms may … he can use what they’ve developed here to further future research and answer complex questions. …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… remain silent under standard laboratory conditions. Researchers with the Department of Energy (DOE) Joint Genome … efforts support the DOE’s Biological and Environmental Research program’s efforts in advancing genome-based biotechnology.  Researchers studying Streptomyces species or related …
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Eelgrass Proves to Be Much Younger Than We Thought
… eelgrass adapted and evolved throughout its history. Their research, published in  August 2023 in  Nature Plants , was … and Portugal. In order to develop a timeline like this, researchers would normally craft a genetic clock based on … another. This change occurs at a predictable rate, enabling researchers to use the genome assembly to calibrate their …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated … isolated viruses in eukaryotic  microbial hosts. Lately, researchers have used culture-independent approaches to gain … virus reference genomes to search for giant viruses in metagenomic reads. Another approach, single cell methods — …
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Toward More Efficient Artificial Photosynthesis
… convert them into energy that is then stored. A team led by researchers at the Max Planck Institute (MPI) for … bioproducts. As a step toward the long-term goal, researchers are now able to automate and fabricate synthetic … chloroplasts. The artificial chloroplast platform allows researchers to mass produce identical droplets that serve as …
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The Power of One, Amplified
… of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale … sequencing approaches including amplicon and metagenomic sequencing. For example, they showed that the … work was supported in part by a Natural Sciences and Energy Research Council of Canada (NSERC) Discovery Grant to PFD …
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Effects of Polar Light Cycle on Microbial Food Web
… roughly 5-7,000 years ago and has been well-studied by many researchers for nearly five decades. In these frigid … were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  … the University of New South Wales, Australia, and included researchers at the U.S. Department of Energy (DOE) Joint …
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Cultivating Symbiotic Antarctic Microbes
… are symbionts and not free-living organisms. The Science Researchers employed multiple microbiology and ‘omics … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … in East Antarctica and enriched for native microbes. Metagenomes from enrichment cultures were sequenced and …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how these microbes … genomic variation in haloarchaea, they also characterized metagenomes (collections of partial genomes) from six …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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Accelerating Metagenomics Discoveries with Deep Learning
… in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole … assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to automatically … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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