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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and … viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a … begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … from Colorado State University, the US Forest Service, New Mexico State University, the Environmental Molecular …
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JGI@25: Stories from Intern Alumni
… 2022 marks the JGI’s 25th anniversary . Over the next few months, we’ll be revisiting a number of notable achievements that showcase our collaborations and … the past 25 years, the JGI has hosted interns from a number of universities and organizations. From field research and …
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The International Virus Bioinformatics Meeting 2020
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John Vogel
… years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium. Genetics, 223 (2), art. … and depletion of soil metabolites by a model grass New Phytologist 222: 1149-1160 …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
Molecular Sciences Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities … just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS … We work with start-ups and mature companies, as long as the data are not proprietary. In addition, the JGI has a …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address … and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two species at once: …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … says. “Many academic labs don’t know how to analyze RNA-Seq data very well, sending it out to companies. I’ll take that …
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Philympics 2021: Prophage Predictions Perplex Programs
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The Earth BioGenome Project 2020: Starting the clock
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open access ecological data to better understand how U.S. ecosystems are changing.  … staying up to date via our website, social media, and newsletter. Q:  How would people find out about the NEON …
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