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… on the scientific questions asked and whether they are within DOE mission areas of bioenergy, carbon cycling, and … https://phycocosm.jgi.doe.gov/oomycota ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups … to use the Browse page tool to compare your own data with the JGI database? A: You can use custom tracks menu …

… Users were previously limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( … are currently limited to: Public data: datasets associated with completed projects that are eligible for public … + annotations) For IMG & Mycocosm: Data that is associated with an ITS project ID (AP or SP) Q: What JGI Data Policy …

… Global chocolate brands can’t exist without cocoa According to the  International Cocoa … metric tons . The global chocolate brands couldn’t exist without cocoa.  But today the plant is under threat due to … of the world’s largest buyers of cocoa, is collaborating with others to develop healthier and more productive cacao …

… had to say about their experiences and what they’ll take with them as they go forward in their careers.   Listed … of Brachypodium distachyon root transporters in plant-microbiome interactions ” Cory-James Pugne-Andenoro : “The … Froula & Ed Kirton Project: “ Streamlining computational studies of misfolding proteins via high performance …

… at the University of Hawai’i at Mānoa. I recently caught up with Karolina at the Plant and Animal Genomes, or PAG … She talked about her  Community Science Project proposal with JGI, in which she’s studying a special kind of plant … a little bit of both of the pathways.  ALISON: Karolina studies these CAM-C3 hybrids. KAROLINA:  Some of these …

… be engineered. “Piloting access to this emerging technology with JGI users will enable us to assess CRAGE’s impact, … first used CRAGE to engineer domesticated bacterial strains with novel biosynthetic gene clusters (BGCs). BGCs make … have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied and Environmental …

… the mechanisms through which sorghum is equipped to deal with adverse environmental conditions, researchers hope to … and how these conditions impact the crop and its microbiome. For three consecutive years (2016-2018), … applied before week 9 (flowering); and a control condition, with water being applied weekly throughout the duration of …

… large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of … cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with respect to the amount of within species recombination, …

… Olpidium attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene … of fungi by James et al. and Sekimoto et al . In both studies, however, Olpidium was unexpectedly grouped with non-flagellated terrestrial fungi, but not with the …

… program and current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution … project, Visel explained. She continued working virtually with her JGI mentors for nearly three years after her … of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted on one or few genomes, but Wint’s …

… Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … research is focused on using metabolomics to link genomes with environments to understand how webs of microbes cycle … D, et al.  SIMILE enables alignment of tandem mass spectra with statistical significance. SIMILE enables alignment of …

… and Kevin Solomon of the University of Delaware. Along with the existing UEC members, their areas of study span the … development. Maurice is a fungal evolutionary ecologist with interests in understanding which processes change … seagrasses, considered marine flowering plants, and their microbiomes. She is exploring the seagrass rhizosphere in …