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JGI Announces 2023 Community Science Program Awardees
Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science … year’s annual CSP call had five areas of emphasis: genes to function, plant and algal functional genomics, inter-organismal interactions, …
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Data Ecosystem
… cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … to facilitate these efforts. Particular areas of emphasis will be the development of tools and infrastructure for microbiome data science, and …
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed … gene atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … Metabolic reprogramming, Schulz explained, makes the host function better under certain conditions, which then helps … populations impacted by adverse environmental conditions. Function prediction on the 2,000 new giant virus genomes led …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both …   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days … of plant metabolism. This metabolism, called crassulacean acid metabolism, or CAM — that’s C-A-M, for short — helps …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity.  In 2021, he … infect soil microbes and influence how soil ecosystems function. He was one of the eight JGI researchers on the …
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Len Pennacchio
Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast … in both the energy and health sectors. Mammalian Functional Genomics Lab VISTA Enhancers VISTA Cardiac …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint Genome … adapted thrive in environments including hot springs and acid mining sites, traits that might have biotechnological …
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Reductive amination cascades in cell‐free and resting whole cell formats for valorization of lignin deconstruction products
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Gut Fungi: Unexpected Source of Novel Chemicals
The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … meal. In their evolutionary history, these fungi branched off early from aerobic fungi, which can breathe oxygen — … analyses) to break up the compounds and to puzzle out their structures. Their results indicate that anaerobic fungi …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … is a superorganism: one being that is actually comprised of two (or more) participants. One is a fungus (usually … the door for more incisive investigations into how lichens function. One of their abilities that’s  now getting more …
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Frederik Schulz
Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of … and phylogenomics) and machine learning to find novel functions that may impact microbiome structure and … academic achievements (2008) … Education … Selected Publications … Awards and Service …
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