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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the … DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing several eucalypt genomes to establish the … from a biofuels production perspective. By using genomic database alignment tools, researchers searched for TPS genes …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … The Impact This study illustrates how the research community brings together the data resources enabled by the …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, … viruses — to support scientists around the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s …
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Genomic sequencing of single microbial cells from environmental samples
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement strategies for de novo …
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JGI@25: The Little Alga That Could
… uniquely associated with carbon dioxide capture and the generation of biomass, making Chlamydomonas (affectionately … a Genome Insider podcast minisode.) Since the JGI’s early sequencing of C. reinhardtii became available, data mined by … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … pools, followed by whole genome amplification and shotgun sequencing. The team first tested the approach on bacterial …
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Direct pathway cloning of the sodorifen biosynthetic gene cluster and recombinant generation of its product in E. coli
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A nucleoside signal generated by a fungal endophyte regulates host cell death and promotes root colonization
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Novel Hydrophobins from Trichoderma Define a New Hydrophobin Subclass: Protein Properties, Evolution, Regulation and Processing
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Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics
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