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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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Calculating the Costs of Multiple Switchgrass Gene Copies
… outline the questions they asked – and answered – in the study that recently appeared in the Proceedings of the … that has been the target of extensive natural sampling and field experiments due to its potential for habitat … of the genome). Lovell et al. focused on the 4X variety, largely because it’s been prioritized in breeding efforts, …
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the number of … were found in diverse habitats including the air, plant rhizosphere, wastewater, and even animal and human (for the …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … order to do so is a resource-intensive process. Now, a new study shows how anaerobic fungi — the kind living in the … (nuclear magnetic resonance) data, gathered using magnetic fields to diagnose electronic structure and functionality on …
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JGI@25: The Little Alga That Could
… (affectionately known as “Chlamy” to those who study it) a powerful reference organism for studying … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … helicase is entirely deleted, potentially resulting in many large mutations. And this is interesting because in humans …
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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Quantitative DNA Stable Isotope Probing Identifies Active Microorganisms Assimilating Volatile Fatty Acids in Full-Scale Enhanced Biological Phosphorus Removal Processes
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … in GOLD. “Besides these, he curated several small sets of phylogeny, biosample metadata tasks we assigned.”       …
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Charting Progress toward Professional Goals
… Hi. I'm Jehan Jacobs. I'm a rising sophomore at UC Berkeley studying data science. I’m here at the Lab with the SEED … you're presenting to people who are already experts in the field, maybe focus more on your results and explain them and … to, like, go through working with data sets that are really large and all of that work just for, so far, results that …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights … scientist at the JGI and Molecular Foundry, and the study’s senior author. In other proteins, two histidine … to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … data from the precious Olpidium zoospores remained largely untouched until seven years later. In 2018, as … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …
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