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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP allows researchers to go …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in Microbiology at the Eberhard Karls … is the Microbial Science Program Head as well as our Deputy of User Programs. Click to learn more about the program's …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and … experience funded by a DOE training grant.  Building off the previous year’s project, undergraduate interns …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The … was theorized that sex determination was possibly driven by genetics, or even temperature. By sequencing the genome, … (A.J.S.) conducted by the US Department of Energy (DOE) Joint Genome Institute ( …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … “All along the way, it was just like rediscovering genetics, with the evolution of sequencing technologies and … Glycine max on Phytozome …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back at the JGI’s … in 2006 when the JGI transitioned from human to microbial genetics. Drell held the role until he retired in 2018. …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has … technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and … science.  Dr. Sneddon is an accomplished leader in data, software, compute, and AI for large-scale genomics and lab …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, … B.S. in Microbiology, Université Blaise Pascal, France M.S. in …
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Trent Northen
… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development and application of advanced mass spectrometry approaches and model …
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