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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … views of these relationships.  Recently , researchers used population genomics to find that while archaeal hitchhikers … Then, using metagenomes and metatranscriptomes generated by the U.S. Department of Energy (DOE) Joint Genome …
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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A Collaboration to Improve Plant Genome Annotations Across Species
… of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under specific … Why is a resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the … difficult. Our Plant Gene Atlas resource addresses that by providing standardized experimental conditions, tissue …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … from public repositories, as well as project data entered by external users. The Impact One of the significant … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers … CRAGE to rapidly label  E. coli  in order to monitor population dynamics in co-culture. These experiments aim to …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have … However, genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint Genome Institute, a … Other surprises in the research include a similar loss of cell walls and a complex pattern of evolution for genes …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes … absorbable solution of sugars. But pollen contains plant cell walls, which have complex, branching chains of … that pollen’s pectin and hemicellulose are degraded mainly by just two clades:  Gilliamella,  which mostly resides in …
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Extracting the Secrets of Secondary Metabolites
… for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired … in 2019. Now, that power is poised to grow exponentially by combining it with CRISPR.  By employing CRAGE, … That work by JGI researchers was published April 2022 in Cell Chemical Biology . When it comes to insect killer P. …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users … to activate multiple chemical production pathways. By tracking gene activity and chemical output over time, the … begins on the genome. This revealed a sweeping cellular response: The bacterium absorbs potassium ions to …
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Contribution of calcium ligands in substrate binding and product release in the Acetovibrio thermocellus glycoside hydrolase family 9 cellulase CelR
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how researchers can gain access to the … so that will have to be planned. Q5: Is travel covered by the FICUS proposal? A: Since there’s no money exchanging …
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