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An Automated Tool for Assessing Virus Data Quality
… data quality. The Science Through advances in sequencing technologies and computational approaches, more and more virus sequences are being … to recover the genomes of these viruses and associate them with their microbial hosts. However, assembling viral …
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can thrive in the soil as … root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its …
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Extracting the Secrets of Secondary Metabolites
… biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for growth … study in which researchers paired CRISPR and CRAGE technologies. While CRISPR (Clustered Regularly Interspaced … payloads directly into diverse microbes. Combining CRAGE with CRISPR provides researchers with a powerful addition to …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the … a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial crops such as … climate resilient switchgrass for bioenergy production. Building on the framework provided by our new switchgrass …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… for the JGI-UC Merced Internship Program was brimming with excitement and determination as they came onsite. From data carpentry to science … in Gold Sandra Hernandez Gonzalez and mentor Hualan Liu, Building Expression Host in Bacilli Class using CRAGE …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … of fern biology and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii show a long …
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JGI User Executive Committee Expands
… of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … Center, Sundy Maurice of the University of Oslo, Aaron Robinson of Los Alamos National Laboratory, Rebecca Smith … and Kevin Solomon of the University of Delaware. Along with the existing UEC members, their areas of study span the …
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Axel Visel
… in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic … of scientific policy, engaging in interactions with the scientific community at large. … 2021 LBNL … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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I-Min (Amy) Chen
Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and … IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, taxonomic, and … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a … switchgrass transformation pipeline and, in collaboration with industrial partners, generated hundreds of transgenic … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …
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Mateus Fiamenghi
Mateus’s research is focusing on the identification and analysis of Mobile Genetic Elements from Metagenomic …
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