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Assembling the Marine Metagenome, One Cell at a Time
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Annotation of metagenome short reads using proxygenes
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IMG/M: a data management and analysis system for metagenomes
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Metagenomic Sequencing of Two Salton Sea Microbiomes
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Visualizing metagenomic and metatranscriptomic data: A comprehensive review
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A metagenomic perspective on the microbial prokaryotic genome census
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New and Improved: Eucalyptus Reference is Now Accessible
… to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant … for eucalyptus in various industries, having genomic resources to develop molecular breeding tools has been …
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First Monoploid Reference Sequence of Sugarcane
… a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of … breeding in these crops. For diploid species, sequencing programs generally focus on a genotype with two identical … sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in developing …
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Taking Stock of the Known and Unknown Microbial Space
… global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department of … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … representation. “When it comes to isolate genome data, our real-world touchstones, we’re just scratching the …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 Nature paper , … Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the American … as Adjunct Scientist at the Bigelow Laboratory for Ocean Sciences and as Associate Adjunct Professor at the …
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Tracing the Evolution of Shiitake Mushrooms
… diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese relative … Asia. Afterward, Lentinula groups evolved further, to four major groups: a lineage in Australasia and L …
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Extracting the Secrets of Secondary Metabolites
… helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under contract DE-AC02- …
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