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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of … most of these gene clusters remain silent under standard laboratory conditions. Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through … reinforced by the  Fort Lauderdale Agreement (2003), the JGI recognized the need to engage the community to inform … 40 years, the International Nucleotide Sequence Database Collaboration (INSDC) has managed the growing corpus of …
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Busting the Unbreakable Lignin
… and hemicellulose that eventually yield fuels, and removing lignin in order to do so is a resource-intensive … through the lignin.  Researchers led by Michelle O’Malley’s lab at the University of California at Santa Barbara  … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s … in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal also reviewed and assigned … a video about the Biotech Partner summer interns at the JGI. What did you do for your summer vacation? …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… proposal by the DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing several eucalypt genomes to …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… to expand its habitat range. But at what cost?  A collaborative team led by researchers at the University of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … postdoctoral researcher Joseph Napier from the Juenger lab and computational biologist Paul Grabowski of …
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A Step Toward Controlling Soybean Rust
… to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida … along with water content. The class had to work collaboratively and creatively to come up with a sense of what …
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing (SIP) proved to vastly reduce labor and improve results. Applying this method to the study … the fungi. The Impact Stable isotope probing is a long and laborious process — as well as a key way scientists study … HT-SIP is a capability available to request through  the JGI proposal calls . …
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