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Differential effects of press vs. pulse seawater intrusion on microbial communities of a tidal freshwater marsh
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — … hold keys to tree health and carbon storage — skills that matter increasingly as the climate warms. However, these are … Remarkable Similarity Despite Vast Diversity For this study, researchers collected soil samples from four sites: …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have … of protein in many food-insecure countries around the globe, as well as a cash crop essential to their economies. … the bean spawned from this original research is the “slow-darkening” trait. Traditionally beans have had a shelf-life …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the … Catalog . Published in the October issue of Nature, the study highlights the vast functional diversity of microbes … and their genetic sequences. Roux was first author on a study featuring a new program called iPHoP , which combines …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand … Finally, using transcriptomics, researchers were able to study which of the trees were turned on or off in response …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the … Colorado State University researchers led a consortium to study river microbiomes. To understand the microbiology of …
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … I will spend the first four sharpening the axe.” In this study,  published in  Metabolic Engineering , a team of …
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her … for the data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining … V, Szeto E, Palaniappan K, and Chu K. Maintaining a Microbial Genome & Metagenome Data Analysis System in an …
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Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
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Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States
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Distinct Microbial Assemblage Structure and Archaeal Diversity in Sediments of Arctic Thermokarst Lakes Differing in Methane Sources
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Microbial Community Analyses Inform Geochemical Reaction Network Models for Predicting Pathways of Greenhouse Gas Production
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