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Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts
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Antarctic lake viromes reveal potential virus associated influences on nutrient cycling in ice-covered lakes
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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was … directed finishing and co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community …
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Better Genome Editing for Bioenergy
… felling their research problem: at a genetic level, how does  Y. lipolytica work? The project was a … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica … sgRNA sequences: six for every gene in the genome. The JGI  DNA Synthesis Science team synthesized these sgRNAs, cloning …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … Volland et al. 2022.   A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound … 199 Needham, D.M. et al. 2019. A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine …
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How Filamentous Fungi Sense Food
… worked with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Program through a proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  … study? How many samples are typically involved? How long does it take to do all the analyses? A:  For the JGI  New … Both qualify and quantify? A:  Yes, metabolomics itself does not require that a plant be well characterized. Our …
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Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
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Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soils
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