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Network Modeling of Complex Data Sets
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and colonize diverse environments. The Science … There are two main types of luciferase-based biosensors: 1) complementation of split luciferase (CSL) and, 2) … The work conducted by the U.S. Department of Energy Joint Genome …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … an array of defense mechanisms. The Impact There are over 10,400 species of ferns alive today. Boasting adaptations in … The OGG has set out to generate high-quality genome assemblies and annotations for 35 species representing all …
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Statement on the Use of Genomics Data
… Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data … access in the field of genomics established in  Bermuda (1996-1997) and reinforced by the  Fort Lauderdale Agreement …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program … Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 … alumni, and other staff gathered at the Integrative Genomics Building, the JGI’s home at Berkeley Lab, as …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and … in this group expanded 10-fold from just 205 genomes, redefining the phylogenetic tree of giant viruses. Metabolic … Metabolic reprogramming, Schulz explained, makes the host function better under certain conditions, which then helps …
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Webinar: SIP technologies at EMSL and JGI
… 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more the better. We want … finish, i.e., QC to separation to library sequencing and assembly. Like others, our turnaround time has been impacted … C13 as well as other isotopes using the IRMS. It’s just a matter of what you’re tuned to be looking for. we haven’t …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the … screen, they can now identify microbes with specific functional characteristics. When they tested the screen … and were able to reconstruct a high-quality draft co-assembled genome for a new genus level member of the novel …
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Microbial Genomics & Metagenomics (MGM) Workshop
… Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome … (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly hands-on …
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DAS Tool for Genome Reconstruction from Metagenomes
… contributions, is key to understanding their ecosystem functions in processes ranging from nutrient cycling to … changes. Summary Researchers have been utilizing metagenomics as a way to study a collection of hard-to-culture … (DAS Tool). To validate DAS Tool, the team applied it to assemblies from both simulated and real microbial communities …
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Metagenomic Sequencing of Two Salton Sea Microbiomes
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