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… functional genomics research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … every family of fungi. In the following guest piece, JGI user Ying Chang in the Spatafora lab describes the effort … Upon maturity, the cucumber roots were rinsed with cold water to stimulate the release of zoospores by Olpidium . …

… at one of the DOE national laboratories or national user facilities. As a result of the latest call , a total of … how engineered environments contribute to greenhouse gases,” Kaze said. “It’s an exciting time in the field … expand with her study of microbes in California’s manmade water transport canals. “This award allows me to work …

… this project. But every part of this project depends on lakewater samples — so this episode is a look at how researchers get these specialized snapshots of a freshwater ecosystem. …

… of the genes in a lipid-prolific yeast. The Impact The team used this set of guide RNAs on  Yarrowia lipolytica to … sources. Moreover, the team says the approach they used to validate their set of guide RNAs could be applied to … work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW …

… on accessing sample-level reports and tracking statuses.  Please follow the steps outlined below. Click the … of a successful sequencing project. It is imperative that users properly assess DNA or RNA mass prior to shipment to … address to receive barcoded tubes/plates that should be used to ship your samples to the JGI. Samples that have not …

… been approved through the annual Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … evolved from a white paper approved through JGI’s CSP New Investigator call to a full-scale submission. She …

… isolated from the microbes found in the oil plume from Deepwater Horizon oil spill led to a draft genome of the first … SAR11 bacteria as initiators of nitrogen loss in these waters. The top image on the left shows how, from a single … 30 major previously uncharted branches of the tree of life. Used in tandem over the years, metagenomics and single cell …

… viridis), a small model grass with a short lifecycle that uses a carbon fixation process known as the C4 pathway, … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … accessions, and to confirm phenotypes, which validate traits.”  “The number of lines sequenced is not trivial, and …

… the microbial diversity patterns of Puerto Nuevo’s coastal waters and sediment with collaborators at the Center for …

In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer … method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell sorting (FACS) to sort … reconstructing genomes directly from the environment and focuses on sequence reads to link mobile elements such as …