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A Grass Model to Help Improve Giant Miscanthus
… chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene … history and perennial lifecycle makes it important to study directly. The large and complex genome of M. sinensis … is a tetraploid, with four sets of chromosomes; the study showed that these sets descend from two now-extinct …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
To boost crops more efficiently in the future, the evolutionary past may hold key insights. The way that plants … Facility located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT … around, regardless of malfunction or misplacement.  In studying this family of ATs, researchers found that these …
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Adaptations to marine versus terrestrial low temperature environments as revealed by comparative genomic analyses of the genus Psychrobacter
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are … given sigma factor are inferred. Prior to this most recent study, only 12 sigma factors and 200 genes (or 209 sigma … to 399. Two of the 11 sigma factors addressed in the study were found to control more than 100 genes, one of …
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I-Min (Amy) Chen
Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and … I-MA et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic … Palaniappan K, and Chu K. Maintaining a Microbial Genome & Metagenome Data Analysis System in an Academic Setting, …
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Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations
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Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale: Insights From an Early Diverging Green Lineage
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… 5,000 times bigger than most bacteria. To put it into context, it would be like a human encountering another human … at the Université des Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing to identify … continue research on the project. At the JGI, Volland began studying Ca. T. magnifica in Tanja Woyke’s Single Cells …
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Tracking the Origins of Methane-Producing Microbes
Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total … were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most of … is typically observed, but to the “TACK” superphylum,” said study first author Bojk Berghuis. “This provided us with …
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Graduate Students Get Thesis Research Opportunity at the JGI
… the opportunity to pursue part of their thesis research at one of the DOE national laboratories or national user … and metabolism, work on which she will expand with her study of microbes in California’s manmade water transport … lab at the University of Texas-Austin. Rambo will be studying the influence of viruses on carbon cycling in …
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Metabolomics Technology Group
… the distributed and dynamic metabolite networks of environmental microbes and how they transform their environment. Research Team    … For further details, please reach …
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Intersubunit Coupling Enables Fast CO2‑Fixation by Reductive Carboxylases
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