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Abundant and active community members respond to diel cycles in hot spring phototrophic mats
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A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants
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Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum
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The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune
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Relationships between fluid mixing, biodiversity, and chemosynthetic primary productivity in Yellowstone hot springs
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Distribution and abundance of tetraether lipid cyclization genes in terrestrial hot springs reflect pH
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Bradyrhizobium sacchari sp. nov., a legume nodulating bacterium isolated from sugarcane roots
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2024 Progress Report
… large-scale data, and professional expertise to support the global research community in studies of complex … April 2024 — through serving an increased number of users with a record output of products, making data easier to … sugarcane genome sequence. The JGI  partnered  with synchrotron user facilities to define the structure and function …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and … be engineered. “Piloting access to this emerging technology with JGI users will enable us to assess CRAGE’s impact, … One , engineering different gene deletions in four gammaproteobacterial species, and then removing the editing …
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JGI Early Career Researchers Featured in mSystems Special Issue
Communications paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA … stable isotope probing (DNA SIP) relies on incubating DNA with isotopically-labeled compounds to link active microbes … Roux, a member of Eloe-Fadrosh’s Environmental Genomics group, makes a pitch for readers to get involved in the …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing … now suggest the gene cluster predates this microbial group. Recently published in the Proceedings of the National … of them archaea. The Quake lab had previously collaborated with the JGI on a proposal using this approach through the …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship … revealed key metabolic pathways and metabolites associated with the tree’s stress response. Finally, using … a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of …
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