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mSphere of Influence: the View from the Microbiologists of the Future
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Scaling Up Existing Skill Sets
… bioinformatics internship opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear … anyone in the Institute to get feedback and insights on the project and everyone’s willingness to guide or mentor me … Brenda Yu Class Year: 1st year graduate student at Stanford University in the Biophysics program. (Graduated from UC …
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Supercharging SIP in the Fungal Hyphosphere
… with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) … widespread type of mycorrhizal fungi, live within a plant’s root system. They form mutually beneficial relationships … effects of climate change. The team’s study used samples from the area immediately surrounding AMF’s long filaments, …
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Better Genome Editing for Bioenergy
Department of Energy’s goal of producing sustainable fuels from alternative sources. Moreover, the team says the … at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … and his advisor Ian Wheeldon, a chemical engineer at the University of California, Riverside. The team also included …
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Kjiersten Fagnan
… closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … management. Dr. Fagnan is also a co-PI for the National Microbiome Data Collaborative where she leads infrastructure … and user-centered design efforts. … PhD Applied Mathematics University of Washington, Seattle BA Applied Mathematics …
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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Laboratory (Berkeley Lab). The accepted proposals come from 80 full proposals, resulting from 95 letters of intent. … The approved proposal from  Alex Harkess of Auburn University started as a small-scale white paper focused on … through the  CSP New Investigator call . It is the first project to have successfully evolved into a full-scale …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab … they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the story behind that giant assembly from Lake Mendota. In this episode: the software evolution …
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Microbial Genomics & Metagenomics (MGM) Workshop
Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a … familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational … data with existing bioinformatic methods to bridge the gap from sequence to biology. …
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Genome Sequence of Victivallis vadensis ATCC BAA-548, an Anaerobic Bacterium from the Phylum Lentisphaerae, Isolated from the Human Gastrointestinal Tract
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