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Uncovering Novel Genomes from Earth’s Microbiomes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … called metagenome binning, we were able to reconstruct thousands of metagenome-assembled genomes (MAGs) … are now available in a  public Narrative , which provides shareable, reproducible workflows. “Metabolic modeling is a …
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Defining a Pan-Genome for Antarctic Archaea
… regional and global biogeography of haloarchaea and the structure and extent of the Antarctic microbial pan-genome. … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his … pan-genome of haloarchaea contains the parts of the genome shared across all haloarchaea, along with the pool of genes …
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Frederik Schulz
… to find novel functions that may impact microbiome structure and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the … and complex life. Science . 376: 1453-1458 Nayfach et al. (2021) A genomic catalog of Earth’s microbiomes. Nature …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … information is encoded in DNA, with RNA delivering the instructions inside DNA to the cell, RNA viruses store their … are even less known than DNA viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as …
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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
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Disclaimer
… or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would … Reference herein to any specific commercial products, process, or service by trade name, trademark, … of California, and shall not be used for advertising or product endorsement purposes. …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of … everywhere, comparatively little is known about viruses, much less those considered large and giant. In a recent … heads JGI’s  Microbial Program . The team mined more than 8,500 publicly available metagenome datasets generated from …
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From Competition to Cooperation
… and how the mutualistic associations allow host plants, such as candidate  bioenergy feedstock crops, to acquire … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the fungal genomes used in the study are available on the JGI fungal portal  MycoCosm . The work builds upon several …
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Soil virus offers insight into maintaining microorganisms
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … images of crystalized samples cloned and synthesized by the JGI, scientists have begun the complex process of uncovering … that break down chitin. A protein tree was then constructed with the sequence data to compare viral chitosanases …
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Improving the Cacao Genome and Phytozome
… Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Mapping the Earth’s Hidden Fungal Kingdom
… with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at the forefront of tackling this … of nearly 2,000 of these genomes reveals just how much we still have to discover about Earth's fungal kingdom. …
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