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… metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so the adage goes, it must be a … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … project. For this project, RNA sequencing was done by the JGI, and proteomics and metabolomics analysis and microscopy …

… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … life. By leveraging massive user-generated datasets at the JGI and other publicly available data, GenomeOcean employs … of discovering and modelling complex biological sequences such as biosynthetic gene cluster structures. Zhong Wang, a …

… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through … Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received … one of the following focus topic areas: Biofuels and bioproducts, Biogeochemistry, and Inter-organismal interactions. …

… around the world whose livelihoods depend on cotton production, and the crop’s annual economic impact of $500 … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Nature Genetics include Jane Grimwood and Jeremy Schmutz of JGI’s  Plant Program , both faculty investigators at the …

… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Volland and colleagues, including researchers at the JGI and Berkeley Lab, LRC, and at the Université des … the whole cell are actually contained within a structure that has a membrane,” Volland said. “And this is very …

… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could use to conduct a similar type of search in microbial and metagenomic … co-infecting phages in the same host cell, relying on their shared desire to avoid CRISPR-Cas immunity. In addition, …

… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D … the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based …

… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … have tapped into the resources and capabilities of both the JGI and the Environmental Molecular Science Laboratory …

… enzymes. Honey bees rely on their gut microbiota to produce these enzymes to break down polysaccharides. But … . The team focused on the dominant bacterial clades shared between honey bee and bumblebee gut microbiomes. … Gilliamella,  which mostly resides in the bee’s ileum, a structure analogous to the human small intestine; and  …

… multiple omics methods to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces … optimization. Many of the metabolic switches identified are shared across hundreds of related species, meaning these … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of …