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Janey Lee
… Janey provides support for custom single-cell user projects and projects within the group. …
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Neha Varghese
… key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of advanced analysis …
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A Powerful Technique to Study Microbes, Now Easier
… Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that …
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W. Berkeley Kauffman
… Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of new applications utilizing a variety of technologies to …
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Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001
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Modulation of sensory perception by hydrogen peroxide enables Caenorhabditis elegans to find a niche that provides both food and protection from hydrogen peroxide
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Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and reproducible experimentation of microbiome dynamics. Together, we will explore …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for … as part of the Early Career Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of …
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Leo Baumgart
… his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the … sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …
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Virus Discoveries that Keep Getting Bigger
… single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … novel viral genomes from freshwater, sewage, and marine samples. In addition to highlighting many viruses …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the … they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes …
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