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A Sorghum Pangenome Opens More Doors to Discovery
… for breeders and researchers to harness the traits that let this biomass powerhouse thrive. Within its genome, … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy, the Gates Foundation, the Advanced Research Projects Agency-Energy (ARPA-E) and the United States Agency …
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The widespread IS200/605 transposon family encodes diverse programmable RNA-guided endonucleases
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All Events
… The JGI is represented at conferences year round; find out where … researchers will be presenting next. Learn about upcoming user-focused webinars and workshops we're hosting. …
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Green Algae Reveal One mRNA Encodes Many Proteins
… in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the Environmental …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Gardeners and farmers around the country recognize that crop varieties grow best in certain regions. Most plant … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … fellow in the Juenger lab and continues to work on the project from a lab at Michigan State University that is …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These … (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California State …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … His responsibilities include the development of novel computational tools to identify virus sequences, the design of new … to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of …
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Tracking the Origins of Methane-Producing Microbes
… Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the discovery of a novel archaeum from …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial … is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI … the amount of DNA that can be inserted at a time. In a  project detailed in  ACS Synthetic Biology , Yoshikuni and …
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Gotta Catch 'Em Gall
… Kasey Markel and Patrick Shih (UC Berkeley and the Joint BioEnergy Institute) … In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater … they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this episode is a look at how researchers …
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