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The More the Merrier: Making the Case for Plant Pan-genomes
… abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Fungal Friends or Foes in Plant Roots
… boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office building, its … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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University of California, Merced Internship Program
… Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to include undergraduate students. To date, more than 90 UC Merced students have contributed to …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… of environments, including plants, soil, and the gut. To better understand the dynamics of this molecule, … motility. By building on a previously developed combined approach, researchers at the University of California, … and the Joint Genome Institute, a DOE Office of Science User Facility, built a chemiluminescent cyclic di-GMP …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… researchers described how the viruses repeatedly attempted to infect and destroy the host archaea – and how the  … communities (metagenomics) and a chemical labelling approach. The Impact Altiarchaea are abundant and dominant … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … their genomes can’t be sequenced using traditional approaches. Identifying and characterizing the planet’s … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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A Step Toward Controlling Soybean Rust
… world’s leading soybean producer , and soybeans are used to produce biodiesel. The fungus  Phakopsora pachyrhizi … proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … systems, sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI … and environmental samples using advanced liquid chromatography mass spectrometry (LC-MS) based methods in …
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Georg Rath
… has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working … of life science and computational science with notable stops at NERSC, IMBA (Institute of Molecular Biotechnology, … development processes. This expresses itself in the open approach JGI compute infrastructure is managed, through the …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub … at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through … user facilities—the  Environmental Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Taking Stock of the Known and Unknown Microbial Space
… decades, advancements in sequencing technologies have led to an abundance of microbial genomes becoming available to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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