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DAP-seq Drives Robust Mapping of Gene Regulation
… assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … “switches” within multiple complex genomes. The end product is an expansive, multi-species dataset enabled by …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… teaches the A-Level Advanced International Certificate of Education (AICE) Biology class at Boca Raton Community High … own high school biology teacher, who helped connect me with internships and training at the Clorox Company and Lawrence … high school in a few months, Benskin shared his own reflections on the experience. “’Doing science’ is something …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Meeting Code of Conduct
… All participants and staff of JGI events are required to adhere to the following Code of Conduct. Event organizers will enforce this Code throughout the …
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Supporting Global Research into Actinomycetes
… word. The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … actinobacteria are of particular interest due to their complex developmental life cycles and diverse … ) “Most people study actinomycetes because they produce a very wide variety of chemical compounds as secondary …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … everywhere, comparatively little is known about viruses, much less those considered large and giant. In a recent … the researchers insights into how they might interact with their hosts, and how those interactions may in turn impact …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  … Phytozome, with a more intuitive interface, deployed on much more maintainable software and hardware infrastructure. … will be forwarded ( where possible ) to their corresponding pages at  …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with … this to untangle which microbes ate the compound and how much they ate.  These analyses provide granular insight into … set up a broad experiment to compare results between labs. Their labs, as well as Pett-Ridge’s group, will assemble …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… Sun, Olena Vatamaniuk, Setsuko Wakao, Meng Wang, and Allison Werner.   A total of 20 proposals were selected by the … Genome Institute (JGI) and the Molecular Foundry (TMF) for their collaborative user program. The portfolio of research … teams work onsite at TMF alongside facility experts to conduct research beyond the capabilities of individual …
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Taking Stock of the Known and Unknown Microbial Space
… of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … genome sequence data generated over the past three decades, their study assesses what fraction of the microbial … over 1.8 million bacterial and archaeal genomes to see how much of their diversity we've actually captured,” said …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community … Moore Foundation grant GBMF #3777 (to EFD). The work conducted by the US Department of Energy Joint Genome Institute, …
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