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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … several points in time to assess nutrient concentration and cell death. Immediately upon transfer, the experimental … This was facilitated in part by RNA library preparation and sequencing from the U.S. Department of Energy (DOE) Joint …
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user facilities—the  Environmental Molecular Sciences Laboratory (EMSL) and the  DOE … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants
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Amplicon sequencing of ice and water phytoplankton and bacterial communities during an extreme winter in a central Canadian great lake
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … the zoospores were then sent to the JGI for whole genome sequencing using the Illumina platform. Unfortunately, both … of land plants and evolved in early microbial biocrust environments.     …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the 730-megabase Sorghum bicolor (L.) … ( 2017 ), have identified many more genes than found in the single reference genome, including traits useful for …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … who encounter an elephant for the first time. Based on the single body part each blind man touches – a tusk, the ear, …
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Extracting the Secrets of Secondary Metabolites
… survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … the BGCs that produce them cannot be activated in lab environments. CRAGE made some headway in overcoming this … That work by JGI researchers was published April 2022 in Cell Chemical Biology . When it comes to insect killer P. …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … its primary funders at the DOE Office of Biological and Environmental Research (BER), among others. New areas of … our near- and long-term goals. And, by the way, as far as sequencing goes, the JGI’s next petabase will likely be …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the … Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … go from start to finish, i.e., QC to separation to library sequencing and assembly. Like others, our turnaround time …
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A Collaboration to Improve Plant Genome Annotations Across Species
… of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under specific … comparative transcriptomics. *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In … handling 18 different species is beyond the capacity of a single lab. Growing different species poses significant …
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