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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help … and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda … roles in the global sulfur cycle. Copies are available online – click here to go download one from the archive of …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … head.  Dr. Fagnan is also a co-PI for the National Microbiome Data Collaborative where she leads infrastructure …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The … Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will … Innovation, which is supported by the U.S. Department of Energy, Office of Science, Office of Biological and …
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Learning to Look
… Machine learning approach significantly expands inovirus … “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal … lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … role in soil carbon storage. Summary There are three types of fungal saprotrophs in the forest. White rot can break …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has deep roots that allow it … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … lineages. The archaeal genome was detected in samples collected by Stephen Quake’s team at Yellowstone …
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