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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … brought back to a lab, because they often need unique conditions and a specific microbial host to replicate. … genomes, JGI researcher Antonio Camargo developed a new pipeline for identifying viruses across many thousands of …
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Primer and platform effects on 16S rRNA tag sequencing
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… to advance foundational science, creating opportunities for the global research community. The U.S. Department of … of individual organisms or environmental DNA, and then using advanced capabilities to understand their inner … in areas such as developing pathogen-agnostic detection and prediction strategies for types of as-yet unknown pathogens. …
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Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii
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Examining the Relationship Between the Testate Amoeba Hyalosphenia papilio (Arcellinida, Amoebozoa) and its Associated Intracellular Microalgae Using Molecular and Microscopic Methods
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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a … , an integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and …
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Four Researchers Join JGI User Executive Committee
… State University, Jonathan Eisen of the University of California, Davis, and Michael Köpke of Lanzatech are the latest … technologies, and toward a secure energy portfolio for DOE priorities.  Bik is an associate professor at the … membership in the UEC, Bik aims to serve as an advocate for early-career scientists and unconventional sample types …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform scientists and researchers more about the patterns and … in different environments. It also shows how environmental conditions may affect metabolic activity of microbiomes. …
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Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… addition to the synthetic biologist’s toolkit: a technique for  c hassis (or strain)-independent  r ecombinase- a ssisted  g enome  e ngineering ( … for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial …
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