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Streamlining Regulon Identification in Bacteria
… genes that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Transcription factors control … critical to ensuring genes vital for growth and survival across various environments are expressed when their …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
For the first time, a team has comprehensively described host-virus dynamics in a microbial … primarily relied on culturing virus and host pairs in the laboratory to study their interactions. This work,  recently … relied on methods that eschew culturing, painting a more systematic picture through single-cell and metagenomic …
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Evolution of a Fungal Gene Expression Regulator
… an A, C, T or G in a genome sequence can lead to changes in protein structures and functions, but the DNA bases … reported on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than … and 5mC in fungi could help researchers find ways to protect poplar and other crops being considered for …
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JGI@25: Building a Better Bean
… bean (Phaseolus vulgaris) is actually a vital source of protein in many food-insecure countries around the globe, as … meal.” McClean cites the common bean’s nutritional value, providing anywhere from 10-30% of daily protein … and involved a lot of different players and researchers across many different labs to be able to sequence a genome.” …
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JGI Scientists Pen Genome Watch Articles
Science User Facility located at Lawrence Berkeley National Laboratory, are sharing their expertise in environmental … an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the JGI, received a message from Andrea Du Toit, … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Taking Stock of the Known and Unknown Microbial Space
Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the current … what fraction of the microbial diversity we know about, and proposes a path forward to curate and cultivate what is … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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DOE JGI Interns Share Their Summer Experiences
… at their desks. As part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the … the National Science Foundation (NSF) and supports underrepresented minorities in science, technology, engineering and … were two U.S. Department of Energy Science Undergraduate Laboratory Internship (SULI) Program students. Sharon Cao …
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JGI-KBase Panel at SACNAS
… to students (and their mentors) how to begin establishing a professional presence through getting credit for any scientific … using the Contributor Roles Taxonomy and what sorts of platforms researchers use to manage their scientific …
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Scaling Up Existing Skill Sets
… of the internship, 4th year PhD student in Quantitative and Systems Biology Mentor: Guohong Wu, Plant Comparative … me to a new career path of being a researcher in a national laboratory. In the future, I plan to pursue this path and … anyone in the Institute to get feedback and insights on the project and everyone’s willingness to guide or mentor me …
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NeLLi — Symposium on New Lineages of Life
… the symposium showcases cutting-edge experimental approaches, computational innovations, and other technological … Goals Metagenomic and single-cell sequence data have provided a means to access novel microbial lineages, leading … Institute for Sea Research (NIOZ) Nicole Poulton , Bigelow Laboratory of Ocean Sciences Roland Hatzenpichler , Montana …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… challenges. In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel technique to … of DNA derived from individual environmental cells. The proof of principle study built off earlier approaches and offered a …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and Science … Plant and Microbe Interaction group at Oak Ridge National Laboratory where he will be working on the Spruce and … graduate intern): In her final year in the Quantitative & Systems Biology PhD program at UC Merced under the …
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