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Discarded diversity: novel megaphages, auxiliary metabolic genes, and virally encoded CRISPR-Cas systems in landfills
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BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters
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Gene and genome duplications have contrasting impacts on biosynthetic and flower developmental pathways in California poppy
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Heterologous Expression and CRISPR/Cas9-Assisted Manipulation of the Hybrid Gene Cluster Specifying the Biosynthesis of Meroterpenoids and Phenazines
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of … across a spectrum of burned soils. By connecting microbial genes with functions useful for forest recovery, this study … samples, they reconstructed and examined over six hundred bacterial genomes — mainly actinobacteria, as well as …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a … soil health. Summary Soil viruses are a reservoir of genetic diversity and capable of transferring genes from one … in archaea, fungi or bacteria. Certain similarities with bacterial counterparts suggest the viral versions of the …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes … — cupids of the plant world facilitating the remixing of genes in the next generation of flowering vegetation. In … yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees rely on their gut microbiota …
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Proposal of Patescibacterium danicum gen. Nov., sp. nov. in the ubiquitous ultrasmall bacterial phylum Patescibacteriota phyl. Nov
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism … by the United States Department of Agriculture National Institute of Food and Agriculture grant 2018-67015-27495, …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … understanding which microbes are present in a sample, to generate data about which organisms are active, and which … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Novel Hydrophobins from Trichoderma Define a New Hydrophobin Subclass: Protein Properties, Evolution, Regulation and Processing
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DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus
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