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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … efforts to build predictive models for the behaviors and interactions of complex systems.  One of its key innovations … conducted by JGI users. These datasets include an extensive 25-year study of microbial communities in freshwater …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back at the JGI’s … the FICUS program, through which researchers can access multiple DOE facilities with a single proposal. From the …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … C. reinhardtii on PhycoCosm … C. zofingiensis on Phytozome …
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VEGA Symposium
…   Register here  Registration fees:  Early Bird rates available now General & Berkeley Lab Attendee – $250 Students & Postdocs – $200 Regular Rates (begin September 19, 2026) General & Berkeley Lab Attendee – … novel viral diversity, molecular mechanisms of virus-host interactions and phage-based technologies for microbiome …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V … On Jennifer Doudna's Nobel Prize … Combining forces with UC Berkeley to seek elusive gene-editing …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … Learn more on the EPICON project … Plant Datasets … Also on Phytozome …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research … enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of … valleys, these organisms have diversified into an estimated 2–6 million species — dwarfing the diversity of plants. To … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, … Kunakom S, Otani H, Udwary DW, Doering DT, Mouncey NJ. Cytochromes P450 involved in bacterial …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, University of California, San Diego … I. Greenblum, Abraham Morales-Cruz, Peng Wang, Yu Zhang, Lin Yang, Cindy Chen et al. "Recruitment, rewiring and deep …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. in Bioengineering, … 1. Swift CL, Louie KB, Bowen BP, Olson HM, Purvine SO, Salamov A, et al. Anaerobic gut fungi are an …
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