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JGI@25: Fueling Investigation into Methane-Making Microbes
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … ch allenges. Methane emissions are a massive factor driving climate change. According to the Environmental … this study, researchers around the world are continuing to build on Hungate 1000 genomes and cultures to work toward a …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research … requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but currently require input in the ~ 30 – 100ng …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , researchers have developed and improved upon a tool that combines existing DNA sequence …
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Fungus Fuels Tree Growth
… symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata … matter, or as an endophyte, living between a plant’s root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its influence on the plant, a team of …
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Mapping Heat Resistance in Yeasts
… yeast Saccharomyces cerevisiae , allowing this species to grow better than its closest relative S. paradoxus at … challenges in understanding wild populations is that tests to find associations between genotype – an organism’s … properties and behaviors – can only be applied to interfertile members of a given species. These approaches …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 … atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta Gribaldo of … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis …
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Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Training the Next Generation of Talent
… New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after … was back on campus at the University of California, Merced to start orientation as a first-year graduate student in the … transcribed instructions for building and maintaining cells through the use of deep-sequencing technologies. The …
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Len Pennacchio
… has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He holds joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio …
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Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems
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Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems
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