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Shed Light in the DaRk LineagES of the Fungal Tree of Life—STRES
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Diversity of cytosine methylation across the fungal tree of life
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Leveraging single-cell genomics to expand the fungal tree of life
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Expanding Virophage Diversity
… sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new … a global analysis of the diversity, distribution, and evolution of virophages.” Lead author David Paez-Espino  … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… these conditions impact the crop and its microbiome. For three consecutive years (2016-2018), researchers conducted … in Parlier, Calif. They grew two sorghum cultivars under three watering conditions, and then collected root, leaf and … drought condition, no water was given during weeks 3 to 8 before flowering. In the post-flowering period …
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Engineering Tree Seasonal Cycles of Growth Through Chromatin Modification
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The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… has already demonstrated CRAGE as a versatile engineering system that allows scientists to conduct genome-wide screens … BGCs make diverse molecules of value to both human and ecosystem health. But bacteria often fail to express their BGC … Instead of only accommodating one DNA insertion, the new system, CRAGE-Duet, can accommodate two DNA constructs, …
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DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus
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Mindfully Moving JGI
Twenty years after the JGI united the genomics expertise of three national labs in one long building at Walnut Creek, … 20 miles away in another city and county began more than three years ago. For JGIers, the moving process began in … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Effects of Polar Light Cycle on Microbial Food Web
… nutrient cycling that evolved separately from other similar systems, and offers new clues into a unique environment in … water below. Cavicchioli and his team took samples from all three sections of the stratified water and determined that … found that the green sulfur bacteria population spiked to 83%, only to dramatically fall to 1% in early spring and …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and … Ye et al (2022) The role of zinc in the adaptive evolution of polar phytoplankton.  Nature Ecol Evol . … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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