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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, … for PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than … the southern California and Mexican coastlines. Roughly 100,000 years later, that Japanese eelgrass crossed the … from the China Scholarship Council to L.Y. (number 201704910807), by a fellowship to M.K. in the Helmholtz …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers involved in …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … with a maternal  B. distachyon parent (D plastotype) some 1.4 million years ago (Mya), while the S plastotype was a …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and … approach. The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the … The U.S. Department of Energy Joint Genome Institute …
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Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes … Biotechnology Genome Sequencing Center and a member of the JGI Plant Program. Lovell was a senior author on this work … and bioenergy production. Together with resequencing of 1,984 cultivars and landraces, these data capture the …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, as well as a … Secondary Metabolites research group . That group, led by JGI Director Nigel Mouncey, has launched its  Secondary …
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be monocistronic – that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (FICUS) collaborative science initiative between the JGI and EMSL.  … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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