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JGI Early Career Researchers Featured in mSystems Special Issue
… recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA stable isotope probing (DNA SIP) relies on incubating … compounds to link active microbes with specific metabolic processes. A third approach steps away from reconstructing …
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Better Genome Editing for Bioenergy
… Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all guides are effective. To … and xylose — into fatty acids that could be used for renewable fuel. In fact, lipids can make up more than 90 … sgRNA sequences: six for every gene in the genome. The JGI  DNA Synthesis Science team synthesized these sgRNAs, cloning …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… Ray and it has been especially called on in the move to the new building where that was really critical. It takes a really … of the vision for that building, incorporated that in the design and you oversaw the construction as well as the move …
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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The genome of the polyextremophilic yeast, Naganishia friedmannii, reveals adaptations involved in stress response pathways, carbohydrate metabolism expansion, and a limited DNA repair repertoire
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A Powerful Technique to Study Microbes, Now Easier
… on an ambitious project: to bring in robots to help process experiments that measure microbial activity in soil. …
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Charting Progress toward Professional Goals
… mentor. By contributing to projects that will help them build skills and tools, they gain invaluable scientific and technical … insights they gained from their mentors, and apply their newfound knowledge to future career paths.  To learn more …
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Jasmyn Pangilinan
… Jasmyn provides bioinformatics tools and analysis support for user science, with a focus on … develop and improve supporting pipeline efficiency through streamlined workflows, enhanced portability and reliability, …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … such as individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic engineering … this Lawrence Berkeley National Laboratory (Berkeley Lab) Newscenter story and this piece in  Current Opinion in …
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A Plant Root Atlas for Tracking Developmental Trajectories
… as well as the roles played by neighboring cells in these processes.   One of the study’s co-authors is  Benjamin Cole … a foundational data set that is now available through a new  single-cell data viewer that was collaboratively …
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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your … trees are based upon? A: This is still work in progress as new genomes are being added. We do plan to publish the tree …
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Large Direct Repeats Flank Genomic Rearrangements between a New Clinical Isolate of Francisella tularensis subsp. tularensis A1 and Schu S4
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