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The JGI Data Portal: Improving User Experience
… human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … team. Based on Google Analytics data, the team noticed that a large percentage of Phytozome users who were seeking … thoughts — they’ll help us build a solid knowledge base that may inform future updates to one (or more) of the JGI …
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Ian Blaby
… Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where he leads three groups focused on HTP DNA … Ian Blaby on Google Scholar Grosjean et al ., A hemoprotein with a zinc-mirror heme site ties heme availability to carbon … Stewardship committee (2020-2022) UCLA Molecular Biology Institute Postdoctoral Award for Research Excellence …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a … in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a … high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these …
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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … have developed multiplexed assays — experimental techniques that allow simultaneous measurement of multiple samples in a … identify where transcription factors (TFs) — the proteins that flip genetic switches — bind DNA were limited to a few …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in Molecular Biology and Biotechnology, University of Crete, … Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global metagenomics. …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample … between the class and the JGI, the students found out that their project was approved and was being funded under … Science Program. The class did not know at the time that the project had already received enthusiastic support …
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JGI announces first round of 2023 New Investigator awardees
… The JGI is eager to work and share our tools with a widening circle of researchers. The JGI is eager to work and share our tools with a widening circle of researchers. That’s why twice each year we look for novel research … high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these …
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Waiting to Respire
… development of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the Cyanobacteria … (“sibling”) lineages Margulisbacteria and Saganbacteria that diverged from the bacterial tree before Cyanobacteria … and Schulz sharing co-first authorship. Their data suggests that the shared common ancestor of all five bacterial …
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A User-Centered Approach to Accessing JGI Data
… common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a structural … create a common set of ‘baseline metadata’ across the files that are submitted by each scientific program,” he said. “If … Public data: datasets associated with completed projects that are eligible for public release, have completed their …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … products.  Sorghum bicolor (L.) Moench is an African grass that adroitly handles droughts, floods and poor soils. This is the first paper that describes sorghum’s response to drought, from a …
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Toward More Efficient Artificial Photosynthesis
… Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts are … sunlight, carbon and water, to convert them into energy that is then stored. A team led by researchers at the Max … and the University of Bordeaux have developed a platform that mimics chloroplast function within a cell-sized system. …
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