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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and biological data …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating … counted once, even though an individual may have several projects/roles. Sequencing Quarter Total Bases (Trillions) … Goal = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† …
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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JGI Scientists Pen Genome Watch Articles
Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology … article, published January 27, is about engineering plants and their microbiomes for more sustainable agriculture … As such, JGI is involved in a broad variety of genomics projects that relate to energy and the environment.” she …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every … but not with the flagellated chytrids. This result has substantial implications on the inference of the evolution of …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
Gardeners and farmers around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local environments; for … fellow in the Juenger lab and continues to work on the project from a lab at Michigan State University that is …
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Busting the Unbreakable Lignin
… shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and … at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on … al. 2021. A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 8674:00585-7. Nayfach S et …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational … Nature Microbiology 4, 1895–1906. Schulz et al., 2020. Giant virus diversity and host interactions through global …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… to announce the 18 scientists selected for our 2025 Community Science Program Annual Call. These projects include cutting-edge research into microbial … — from freshwater estuaries reshaped by dam removal to Antarctica’s photosynthetic mats — to reveal how these …
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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for growing … biofuels seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide … the genome of an alga that thrives in saltwater (halotolerant) and produces the most biomass to date of any such …
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