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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI … opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer … anyone in the Institute to get feedback and insights on the project and everyone’s willingness to guide or mentor me …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, laboratory information tracking, and enables efficient analysis and reporting of …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science … (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical … -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his graduate student …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is … many varied environments? Now, a recent study published in Microbiome has uncovered that SAR324 encompasses four … out that, without the JGI, the discoveries made in this project wouldn’t have been possible. Scientists hadn’t known …
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JGI at the AGU Fall Meeting
… This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting … poster B45O-1813  : Maggie Bowman, PNNL: “EMSL’s 1000 Soils Project: core collection strategy and data types available” …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. … IAC is chartered to render advice, guidance, and counsel on the effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) activities and …
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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early … who study viruses that infect organisms much smaller than humans, like bacteria, this power is not surprising at all.  …
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Training the Next Generation of Talent
… New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced … challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in … on the genetic mechanisms of chemotaxis in the Arabidopsis microbiome, particularly, how bacteria can be driven toward …
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Alabama A&M Interns Access An Abundance of Knowledge
… In 2024, the DOE Joint Genome Institute and Alabama A&M … DOE RENEW initiative, undergraduate student Ti’Yanna Watson and graduate student LaMonika Dent worked with JGI … of Brachypodium distachyon plant root exudates on the plant microbiome. They also took part in many enriching workshops …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … This work received funding by the Alfred P. Sloan foundation (grant number … (Nachwuchs-gruppe “Dr. Alexander Probst”), and the NOVAC project of the German Science Foundation (grant number DFG …
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