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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium …
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A Complex Confection Decoded: Sugarcane Reference Genome
… reference quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … Assembling a genome has been compared to putting together a puzzle without necessarily knowing the final image. …
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Dan Rokhsar
Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational … over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the … this evolutionary focus, his work on plant genomics is targeted towards the development of improved biofuel feedstocks …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors who … the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s …
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Uri Neri
Uri Neri is a computational biologist who spends his days wrangling viral genomes and occasionally remembering to document his code. At JGI, he develops tools for viral discovery and analysis, …
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Cultivating Symbiotic Antarctic Microbes
Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers … employed multiple microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial …
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At the Forefront of Terrestrial Virus Research
Rich and Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research opportunities at DOE laboratories.   …
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How Microbes Can Protect Plants in Drier Straits
… at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to help make plants more resilient …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and …
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Back in the Lab: the 2023 Summer Intern Experience
This summer marked the first fully in-person internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave interns the opportunity to be fully immersed in not only their work, but the …
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A Natural Mechanism Can Turbocharge Viral Evolution
… how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first … proteins on its tail fibers to latch onto a specific target on the microbial cell’s membrane. Two decades ago, a … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at …
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