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Picking Up Threads of Cotton Genomics
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Nature Genetics include Jane Grimwood and Jeremy Schmutz of JGI’s  Plant Program , both faculty investigators at the … methods of breeding into cotton,” said Schmutz, who heads JGI’s Plant Program. He and Grimwood were also part of the …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … with a proposal from UT-Austin’s Tom Juenger, a longtime JGI collaborator and a senior author on this study. The use … data collection,” he added. Jeremy Schmutz , head of the  JGI Plant Program , drew parallels between these  common …
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Pinning Down a Piece of Photosynthesis
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … said Crysten Blaby-Haas, a research scientist at the JGI and Molecular Foundry, and the study’s senior author. In … these lines came from UC Berkeley professor and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they …
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Team Science Reveals Important Protein in Poplar
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to produce desirable traits.  Partly enabled by the JGI  Community Science Program New Investigator program , … Foundry and the Joint BioEnergy Institute (JBEI.) The JGI team measured the levels of gene expression in the …
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Triggering Morel Fruiting
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on … acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide … for every family of fungi. In the following guest piece, JGI user Dr. Tan details the results of the team’s work. …
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Expanding Virophage Diversity
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … own perspectives. The interns from this cohort and their JGI mentors are listed below, along with their project focus … Ecology & Evolution of Self-Catalytic Introns across Earth’s Microbiomes Sonia Vargas and mentors Tomas Tyml and …
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Improving the Cacao Genome and Phytozome
… for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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How Maize Makes An Antibiotic Cocktail
… as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  … by a DOE Joint Genome Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … August 6th? All URLs with a domain of  https://phytozome.jgi.doe.gov will be forwarded ( where possible ) to their corresponding pages at  https://phytozome-next.jgi.doe.gov . If a genome from v12 is present in v13, the …
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Yasuo Yoshikuni
… has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology … for building composite materials. Before joining the JGI, Dr. Yoshikuni was co-founder and chief science officer … Yoshikuni is the DNA Synthesis Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … author on the paper and computational biologist at the JGI. “We had to work really hard to make them work for the … beyond plants. Currently, this technology is available to JGI users for studies on organisms with smaller genomes, …
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